Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015833291.1_cds_XP_016505184.1_18549
CDS Infomation

[gene=LOC107823102] [db_xref=GeneID:107823102] [protein=pentatricopeptide repeat-containing protein At5g43790] [protein_id=XP_016505184.1] [location=24834..26639] [gbkey=CDS]
Sequence

ATGAATACATTGAGCCCAAAATCTGTCCACCCAATATTCAAACTCATAGAACAATGCAAA
AACATAGCCACTCTTAAGCAAGTGCATGCTCAAATGATCACAACTGGGCTTATTCTCCAC
ACTTACCCTCTCAGTCGCATACTTATTTCGTCTTCCACCCTAGCTGCCACCAACTCCTAT
GCGCTAACCATTTTCAACCAAGTAAGCAATCCAACAATTTTCCTTTTCAACACCCTCATC
TCATCATCCCTTGCTAGGAAAGATGATCAACTTCACTTTTCCTTAGCTCTTTACTCTCGT
ATTCTCACTCAAACCACTCTCAAGCCCAATAATTACACCTACCCCTCTCTTTTTAAGGCT
TGTAGTTCTCAACCATGGCTTCAACATGGCCGCGCCTTGCATACCCATGTCTTGAAATTC
CTTGAACCACCTTATGATCATTTTGTTCAAGCCTCGTTGCTTAATTTCTACTCCATGAGT
GGTGAATTGGGGGTTGCAAGATTCCTCTTTGATCAAATCACAAGACCAGATTTAGCTTCT
TGGAACTCCATACTTACAGCTTATGCCCATAATACTTCTGTTCAATCGGAAGCCAGTTTT
GATAATGCTTATGATAGCACTAATTTGTCATTGGAAGTTTTGCTTTTGTTTAATCAAATG
CAGAAATCTTTGACCAGTCCTAATGAAGTTAGTTTGGTGGCGTTGATTAGTGCTTGTGCT
GATTTGGGTGCGCTTAGTCAGGGGATATGGGCTCATTCTTTTGTGCTTAGGAATGGCCTC
AAGCTCAACCGCTTCGTTGGCACAACTTTAGTCACCATGTATGCAAATTGTGGCCGTCTT
GATATTGCTCGACAGTTGTTCGATCAATTGTTCGAAAGAGACACGTATTGTTATAATGCC
ATGATTAGAGGACTTGCAGTGCATGGCCTTGGGCTGGAGGCTCTTGACCTTTTCGAGAAA
ATGGAATTAGAAGGTTTGGTTCCTGATGATGTAACTATGCTAGTTATAATATGTGCTTGC
TCTCATGTGGGGTTGGTTGATCAAGGCTGCGAATTTTTTGAGTCAATGAAGGAGGATTAT
GGAATTGAGCCTAAGCTTGAGCATTATGGGACCTTAGTGGATCTTTTGGGTCGAGCAGGC
CGGGTGAAGGAGGCTGAGGAAATAGTTCAGACCATTCCTATGAAGCCAAATGCAGTTCTT
TGGAGATCTTTACTTGGAGCTGCTCATGTTCATGGTAACTTAGAGGTAGGTAAATCAGCA
TTAAAACAGTTGATACAGCTAGATCCAAAGACTAGCGGGAATTATGTGTTGTTATCGAAT
ATGTACGCTAGCTTGAACAAGTGGGATGATGTGAAAAATGTAAGGAAATTGATGAAAGAT
CATGGAATCGACAAAGCTCCTGGTAGTAGCATTGTCGATATTGATGGTGCTATGCACGCG
TTCCTTATTGGCGATAAGACTCATCCACACGCTAAACGGATATATCTGAAGCTAGATGAG
ATGAATAGAAGGCTGCAAGAACAGGGTCATAAGTCAGGAACAAGAGAAGTGTTGTTTGAC
ATTGAAGAAGAAGAGAAGGAAGATGCGCTTTCATACCATAGTGAAAGGTTAGCCATAGCT
TATGCTCTTATTGCATCTAATTCTGGTGCCCCTATTAGAATCATAAAAAACCTAAGGGTC
TGCAGTGACTGCCATGCAGCTACTAAGCTTATTTCAAGAATTTATGAGAGGGAAATTATA
GTAAGAGATAGATCTAGGTTTCATCACTTTAGAAATGGGACTTGTTCTTGTTTGGATTAT
TGGTAG

Peptide Sequence

PEP ID

XP_016505184.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g43790 [Nicotiana tabacum]
Sequence

MNTLSPKSVHPIFKLIEQCKNIATLKQVHAQMITTGLILHTYPLSRILISSSTLAATNSY
ALTIFNQVSNPTIFLFNTLISSSLARKDDQLHFSLALYSRILTQTTLKPNNYTYPSLFKA
CSSQPWLQHGRALHTHVLKFLEPPYDHFVQASLLNFYSMSGELGVARFLFDQITRPDLAS
WNSILTAYAHNTSVQSEASFDNAYDSTNLSLEVLLLFNQMQKSLTSPNEVSLVALISACA
DLGALSQGIWAHSFVLRNGLKLNRFVGTTLVTMYANCGRLDIARQLFDQLFERDTYCYNA
MIRGLAVHGLGLEALDLFEKMELEGLVPDDVTMLVIICACSHVGLVDQGCEFFESMKEDY
GIEPKLEHYGTLVDLLGRAGRVKEAEEIVQTIPMKPNAVLWRSLLGAAHVHGNLEVGKSA
LKQLIQLDPKTSGNYVLLSNMYASLNKWDDVKNVRKLMKDHGIDKAPGSSIVDIDGAMHA
FLIGDKTHPHAKRIYLKLDEMNRRLQEQGHKSGTREVLFDIEEEEKEDALSYHSERLAIA
YALIASNSGAPIRIIKNLRVCSDCHAATKLISRIYEREIIVRDRSRFHHFRNGTCSCLDY
W

Transcript Sequence

Gene sequence data has not been registered.